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Author: Andrew Thaler

Marine science and conservation. Deep-sea ecology. Population genetics. Underwater robots. Open-source instrumentation. The deep sea is Earth's last great wilderness.

This Week in the Deep

Posted on January 26, 2013January 25, 2013 By Andrew Thaler
Science

New and noteworthy publications in deep-sea science for the week of January 21, 2013.

Geobiology: Did life originate from a global chemical reactor?

Many decades of experimental and theoretical research on the origin of life have yielded important discoveries regarding the chemical and physical conditions under which organic compounds can be synthesized and polymerized. However, such conditions often seem mutually exclusive, because they are rarely encountered in a single environmental setting. As such, no convincing models explain how living cells formed from abiotic constituents. Here, we propose a new approach that considers the origin of life within the global context of the Hadean Earth. We review previous ideas and synthesize them in four central hypotheses: (i) Multiple microenvironments contributed to the building blocks of life, and these niches were not necessarily inhabitable by the first organisms; (ii) Mineral catalysts were the backbone of prebiotic reaction networks that led to modern metabolism; (iii) Multiple local and global transport processes were essential for linking reactions occurring in separate locations; (iv) Global diversity and local selection of reactants and products provided mechanisms for the generation of most of the diverse building blocks necessary for life. We conclude that no single environmental setting can offer enough chemical and physical diversity for life to originate. Instead, any plausible model for the origin of life must acknowledge the geological complexity and diversity of the Hadean Earth. Future research may therefore benefit from identifying further linkages between organic precursors, minerals, and fluids in various environmental contexts.

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This Week in the Deep

Posted on January 20, 2013January 28, 2013 By Andrew Thaler
Science

New and noteworthy publications in deep-sea science for the week of January 14, 2013.

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Bring the trench to the bench or bring the bench to the trench? The future of deep-sea exploration

Posted on January 15, 2013January 15, 2013 By Andrew Thaler
Science

AndrewThumbNewsweek, in is new and impressive digital format, released a series of articles this week on deep-sea exploration, the challenges of human occupied and remotely-operated vehicles, and the decline in funding for ocean science, particularly in the deep sea. The main article, The Last Dive? Funding for Human Expeditions in the Ocean May Have Run Aground, is a deep, detailed look at the state of deep-sea science, seen through the eyes of Dr. Sylvia Earle and Dr. Robert Ballard, two giants in the ocean community. The follow-up, James Cameron Responds to Robert Ballard on Deep-Sea Exploration, provides insight into the mind of James Cameron, who last year successfully dove the Challenger Deep in his own deep-sea submersible.

Both the articles continue to perpetrate the canard that there is a deep chasm between the human-occupied submersible (HOV) and remotely-operated vehicle (ROV) communities. The reality is that deep-sea scientists use a variety of tools, from mechanical samplers to autonomous robots, to study and understand the deep. The choice comes down to which tool is most efficient, least expensive, and currently available. Absent a sea change, ROV’s will continue to be the workhorses of deep-sea research. And that is a good thing. I sang the praise of my robot underlings the last time this debate breached the public consciousness. I also discussed why basic deep-sea research and training highly skilled ROV pilots is a matter of national security.

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This Week in the Deep

Posted on January 12, 2013January 25, 2013 By Andrew Thaler
Science

New and noteworthy publications in deep-sea science for the week of January 7, 2013.

Deep Sea Research Part 1: Oceanographic Research Papers: Discovery of a new hydrothermal vent based on an underwater, high-resolution geophysical survey

 

A new hydrothermal vent site in the Southern Mariana Trough has been discovered using acoustic and magnetic surveys conducted by the Japan Agency for Marine–Earth Science and Technology’s (JAMSTEC) autonomous underwater vehicle (AUV) Urashima. The high-resolution magnetic survey, part of near-bottom geophysical mapping around a previously known hydrothermal vent site, the Pika site, during YK09-08 cruise in June-July 2009, found that a clear magnetization low extends ~500 m north from the Pika site. Acoustic signals, suggesting hydrothermal plumes, and 10 m-scale chimney-like topographic highs were detected within this low magnetization zone by a 120 kHz side-scan sonar and a 400 kHz multibeam echo sounder. In order to confirm the seafloor sources of the geophysical signals, seafloor observations were carried out using the deep-sea manned submersible Shinkai 6500 during the YK 10-10 cruise in August 2010. These discovered a new hydrothermal vent site (12°55.30′N, 143°38.89′E; at a depth of 2922 m), which we have named the Urashima site. This hydrothermal vent site covers an area of approximately 300 m x 300 m and consists of black and clear smoker chimneys, brownish-colored shimmering chimneys, and inactive chimneys. All of the fluids sampled from the Urashima and Pika sites have chlorinity greater than local ambient seawater, suggesting subseafloor phase separation or leaching from rocks in the hydrothermal reaction zone. End-member compositions of the Urashima and Pika fluids suggest that fluids from two different sources feed the two sites, even though are located on the same knoll and separated by only ~500 m. We demonstrate that investigations on hydrothermal vent sites located in close proximity to one another can provide important insights into subseafloor hydrothermal fluid flow, and also that, while such hydrothermal sites are difficult to detect by conventional plume survey methods, high-resolution underwater geophysical surveys provide an effective means.

 

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Surviving Grad School: A Practical Guide to an Impractical Lifestyle

Posted on January 10, 2013January 10, 2013 By Andrew Thaler 1 Comment on Surviving Grad School: A Practical Guide to an Impractical Lifestyle
Science

Ah, graduate school. For approximately 5 years you will live awash in the intellectual stimulation that comes with the pursuit of knowledge. You will learn more than you ever have before. Now at the forefront of the human data engine, you are not just being taught, but pushing the limits of human understanding imperceptibly, but significantly, … Read More “Surviving Grad School: A Practical Guide to an Impractical Lifestyle” »

Arduino Project Log: Getting Started with a Digital Compass

Posted on January 7, 2013January 10, 2013 By Andrew Thaler 2 Comments on Arduino Project Log: Getting Started with a Digital Compass
The Open CTD Project

Andrew ThumbAs I mentioned during the last Blue Pints episode, this year I’m going to be attempting to build a low-cost open source CTD for basic oceanographic measurements. This is in addition to my ongoing work with the OpenROV. I have a pretty solid electronics background, but in order to accomplish this goal, I also need to learn how to program microcontrollers, something that I’ve never done before. For the next several months I’m going to tackle various small Arduino project to get comfortable with the fundamentals. I’ll be working out of Environmental Monitoring with Arduino: Building Simple Devices to Collect Data About the World Around Us and Arduino Projects to Save the World, both of which feature beginner to advanced projects based around environmental monitoring and data collection, as well as Programming Arduino Getting Started with Sketches for as a basic programming primer.

For my first project, I wanted to start with something that could eventually be implemented with the OpenROV–a magnetometer to provide compass headings while navigating the robot. As a first step, I wanted to learn how to program the Arduino board to calculate compass headings from a magnetometer and develop some sort of rough visual readout of that heading.

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Bluefin Tuna and the Tsukiji Fish Auction: caution in drawing conclusions from record breaking prices

Posted on January 5, 2013January 6, 2013 By Andrew Thaler 1 Comment on Bluefin Tuna and the Tsukiji Fish Auction: caution in drawing conclusions from record breaking prices
Uncategorized

Andrew ThumbToday marks the first Tsukiji fish market tuna auction of 2013, and, as in the previous two years, the first fish sold broke all previous records. In 2011, the record breaking tuna sold for $396,000. Last year, we tipped the scales at $736,000. Early this morning, the record breaking bluefin tuna blew the previous records out of the water, fetching a whopping $1,800,000 at the auction block, making this 488-lb tuna the most expensive fish ever purchased.

Over the next few weeks, I’m certain that we’ll see this number presented as an argument against bluefin tuna fishing, as an example of an industry out-of-control, and as a symbol of how ruthlessly we’ll hunt the last few members of a species to put on our dinner plates. These issues are reflected in the tuna market, but I want to urge caution in drawing too many conclusions from this record breaking number.

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This Week in the Deep

Posted on January 5, 2013January 25, 2013 By Andrew Thaler
Science

New and noteworthy publications in deep-sea science for the week of December 31st, 2012.

PLoS One: How Deep-Sea Wood Falls Sustain Chemosynthetic Life

Large organic food falls to the deep sea – such as whale carcasses and wood logs – are known to serve as stepping stones for the dispersal of highly adapted chemosynthetic organisms inhabiting hot vents and cold seeps. Here we investigated the biogeochemical and microbiological processes leading to the development of sulfidic niches by deploying wood colonization experiments at a depth of 1690 m in the Eastern Mediterranean for one year. Wood-boring bivalves of the genus Xylophaga played a key role in the degradation of the wood logs, facilitating the development of anoxic zones and anaerobic microbial processes such as sulfate reduction. Fauna and bacteria associated with the wood included types reported from other deep-sea habitats including chemosynthetic ecosystems, confirming the potential role of large organic food falls as biodiversity hot spots and stepping stones for vent and seep communities. Specific bacterial communities developed on and around the wood falls within one year and were distinct from freshly submerged wood and background sediments. These included sulfate-reducing and cellulolytic bacterial taxa, which are likely to play an important role in the utilization of wood by chemosynthetic life and other deep-sea animals

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Watch Blue Pints Episode 5: 2012 in review, what’s in store for 2013

Posted on January 4, 2013October 27, 2013 By Andrew Thaler
Uncategorized

httpv://www.youtube.com/watch?v=3vuOrHXkMuk&feature=plcp

Join us tonight at 7 for the first 2013 edition of Blue Pints!

Posted on January 3, 2013October 27, 2013 By Andrew Thaler
Uncategorized

We’re kicking off the new year by reviving our popular Google+ Hangout — Blue Pints! Join us tonight (Thursday, January 3) at 7 for a casual conversation about marine science and conservation. On this episode, we’ll be reflecting on our favorite moments from 2012 and giving you a peak at what we have planned for … Read More “Join us tonight at 7 for the first 2013 edition of Blue Pints!” »

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