Beneath the Broken Ice: Playing with Mud

Posted on By Guest Writer
Science

Megumi Shimizu is a graduate student aboard the RVIB Nathaniel B. Palmer to collect sediment samples near Antarctic Peninsula as a part of the LARISSA project. She is interested in microorganisms and biogeochemistry of marine sediments; how the metabolism of microorganisms interact with the surrounding environment and the chemical components in sediments. See her first update here.

Are you playing with mud on the research vessel?

Some people on the ship joked when they saw me processing my sediment core. Yes, I’m playing with mud in Antarctica. Sampling sediments can tell us a lot, not only what happened across geologic time scales, but also what kind of organisms are living in the sediment, microbiology, and the geochemical conditions. We are serious about collecting mud and playing with mud.

upper panel: the entire view of glove box, lower panel: Liz Bucceri working on sediment sample processing in glove box. Photo by Megumi Shimizu
upper panel: the entire view of glove box, lower panel: Liz Bucceri working on sediment sample processing in glove box. Photo by Megumi Shimizu

Nathaniel B. Palmer has three pieces of equipment to collect sediment; the megacore, kasten core, and jumbo piston core. The length you can reach below seafloor is different, 40cm, 1.5 to 6m and 24m respectively. Megacore is more suitable for biological studies since it preserves the sediment-water interface better than kasten core and jumbo piston core. Geological studies prefer Kasten core and jumbo piston core so that they can get older data from the sediment.

For my microbial lipid biomarker study, I’m taking samples from the megacore and kasten core. Along with microbial lipid and DNA, our team is collecting sediment and porewater (the water in pore spaces of sediments) to analyze geochemical properties of sediments, such as methane, sulfate, sulfide, and dissolved inorganic carbon. To maintain the condition of the sediments as close as the real environment, the sediment cores are processed under the condition of cold (~0C degree) and anoxic (no oxygen). How to make that condition? We have a special room called “The Little Antarctica”, on the ship, which is a big refrigerator containing glove box. A glove box is the transparent container with two pairs of gloves. The inside of the box is kept practically anoxic (less than 1% of oxygen. Atmospheric oxygen is ~20%).

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VentBase – securing the conservation of deep-sea hydrothermal vent ecosystems

Posted on By Andrew Thaler 3 Comments on VentBase – securing the conservation of deep-sea hydrothermal vent ecosystems
Conservation, Science

As a marine biologists just beginning my deep-sea education, conservation as a priority was an alien concept. The deep sea was the last true wilderness, distant and alien, impossibly difficult to access. We knew that exploitation was coming, companies had been exploring the potential of deep-sea mining for decades, but they always seemed to be generation away. Conservation was a question for my scientific descendants. For my peers and me, we still had a few good decades left in the golden age of exploration that began in the 1970’s with the first discovery of deep-sea hydrothermal vents. That age is about to end.

The reality of deep-sea exploitation is imminent. The first hydrothermal vent mining lease has been issued in the territorial waters of Papua New Guinea. The International Seabed Authority, which regulates seafloor extraction in international waters, has approved the first two mining exploration permits for seafloor massive sulfides in international waters. Manganese nodule extraction, once quashed by a global decline in metal prices, has recently reappeared. Crustal metal deposits are fast becoming a viable resource. The isolation of rare earth elements from the seafloor, a newcomer in deep-sea exploitation, could open up new, massive deposit for critical electronic components. All of these are likely to occur within the next few decades.

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Bad news for whale sharks: The world’s largest fish are being killed for bait and billboards

Posted on By David Shiffman 17 Comments on Bad news for whale sharks: The world’s largest fish are being killed for bait and billboards
Science

WhySharksMatter and a whale shark at the Georgia Aquarium

The world’s largest shark eats only plankton, couldn’t bite a human if it wanted to, and is one of the few sharks that could be reasonably described as beautiful. Globally, SCUBA divers pay an estimated $50 million each year for the chance to swim with these incredible fish. Their long migrations through international waters makes international cooperation necessary to protect them, which is particularly important because the 30 years it can take for these animals to reach reproductive maturity means that populations will take a long time to recover if they are overexploited. They’re listed by the IUCN Shark Specialist Group as Vulnerable globally. Between their charismatic nature, their inability to harm humans, and their value to ecotourism, it should be easy to convince governments to protect whale sharks *, making two recent reports all the more shocking.

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I sing the praise of my robot underlings, the workhorses of deep sea exploration

Posted on By Andrew Thaler 5 Comments on I sing the praise of my robot underlings, the workhorses of deep sea exploration
Science

Building the Remote Lee. Photo by Andrew Thaler

James Cameron’s triumphant dive and (equally important) return from the Challenger Deep is a landmark achievement. In 62 years, only 3 people have ever visited the bottom of the Mariana Trench. While budgets for scientific exploration have been cut across the board, Cameron ponied up tens of millions to build only the second human-occupied submersible capable of reaching those depths. But the Deepsea Challenger is not the only visitor to Challenger Deep in the last few decades. In May, 2009 the ROV Nereus plumbed the depths of Challenger Deep. More than a decade before that, Kaikō, a Japanese ROV, became the first unmanned vehicle to reach into the Mariana Trench and return with video, sediment, and biological samples during several return trips.

And, while Alvin is in drydocks and human-occupied submersibles are tragically being mothballed across the country, more remote operated vehicles are exploring the ocean than ever before. They are being built and run by scientific institutions, private firms, public universities, high schools, industrial corporations, and individual citizens. My lab mate and I built one last winter, for fun. And while I agree with Al and Craig at Deep Sea News that ROV’s are not as “sexy” as human occupied submersibles, that is a marketing problem, because, like it or not, ROV’s are the real masters of deep sea exploration. If your goal is to learn as much as possible about the deep ocean, if you want the biggest return on your investment, if you want to involve a huge and diverse exploratory team, the ROV is king.

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Book review: man and shark

Posted on By David Shiffman 3 Comments on Book review: man and shark
Uncategorized

If a picture is worth a thousand words, than Man and Shark is a must for anyone interested in shark fisheries and conservation issues. This book by Alex Hofford and Paul Hilton features a collection of incredible photographs of sharks and shark fishing from all over the planet, from the fishing ports of the developing … Read More “Book review: man and shark” »

Beneath the Waves Film Festival is this Friday, check out the official list of films

Posted on By David Shiffman 1 Comment on Beneath the Waves Film Festival is this Friday, check out the official list of films
Uncategorized

I am really excited to announce that our friends over at the Beneath the Waves Film Festival have made their official selections for the 2012 event to be held this Friday at the 41st Benthic Ecology Meeting in Norfolk, Virginia.Now in its third consecutive year, this unique student run science communication event solicits films from … Read More “Beneath the Waves Film Festival is this Friday, check out the official list of films” »

Good intentions and negative transfer effects: The California swordfish fishery

Posted on By Guest Writer 25 Comments on Good intentions and negative transfer effects: The California swordfish fishery
Conservation, Science

Image courtesy Wikimedia Commons, via the National Marine Fisheries Service historic collection

A press release circulating on Twitter, which claims that a “deadly expansion” of a California fishery will negatively affect critically endangered leatherback sea turtles, has been making waves in the marine conservation and fisheries communities, inspiring a series of interesting discussions. Is it better to buy US-caught seafood with some bycatch than foreign-caught seafood from fleets with less strict environmental regulations? Is the current “Pacific leatherback conservation area”, a large region of the ocean where no fishing is allowed, too much of a restriction on U.S. fisheries? Can there be a balance between fisheries and conservation? I invited Jonathan Gonzalez, a California graphic designer with a strong interest in marine conservation issues, to write a guest post about the swordfish fishery in question. You can follow him on Twitter here, and he’s happy to answer your questions about this issue in the comments section of this post. In addition to his graphic design work, Jonathan has served as the assistant director of the Santa Barbara Marine Mammal center, and has worked with the California Shark Coalition to gather support from fishermen for the state’s recent ban on shark fins. 

by Jonathan Gonzalez

Fisheries are complicated and often misunderstood. We often see conflicting information about what fish we should or should not eat and we see general statements about certain gear types that over simplify an extremely complex issue. But don’t be discouraged, learning about fisheries can be very fun and can lead to eating seafood with confidence, free of any guilt or confusion. One particular fishery I want to talk about that is not only complicated, but in my opinion it is California’s most misunderstood fishery. I’m talking about the drift gillnet (DGN) fishery for swordfish and common thresher sharks (CTS). Swordfish, CTS and mako sharks caught in Hawaiian set longlines are also landed in California, but I am not going to talk about that here.  I am going to focus on the DGN fishery because this fishery has been in the headlines a bit lately because of recent motions that were voted on at a Pacific Fisheries Management Council (PFMC) meeting. Here is a press release you may have seen that in my opinion is full of factual errors and a few downright slanderous statements. I’m not going to point them all out and I’m not going to try to tell you what to do. Instead I am going to give you some background about the fishery and provide you with information that will hopefully help you to make an informed decision for yourself.

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