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Category: Science

Yoda, Yoga, and the Fish of Cannery Row

Posted on April 6, 2015 By Guest Writer
Blogging, Conservation, Science

unnamedStacy Aguilera is an Abess Fellow at the University of Miami. Her dissertation research focuses on why certain small-scale fisheries in California are relatively successful, from a social and ecological perspective. Follow her on Twitter here!

As my favorite little green guy once said, “Difficult to see. Always in motion is the future.” Yoda may have never shared some brewskies after work with a bunch of fishery managers, but boy would they cheers to this. Managing fisheries is a tough job, especially considering all the many factors that can quickly and drastically change a fishery. We’ve got markets bouncing here and there, climate varying in short blurps and over a long time, technology is getting better, and new regulations are proposed and passed all the time. You have to think about all the people involved while also thinking about the species and broader ecosystem as a whole. All these things happening at once means fishery managers, and especially fishermen, processors, and buyers, are dealing with an uncertain future and while some things are predictable, the future is indeed difficult to see.

So how do we manage and fish to keep our fishing industry alive, while also keeping our oceans healthy and full of life? One way is to manage for flexibility. As our recent paper published this March in PLoS ONE explains, managing fisheries adaptively is difficult, but allowing participants to fish multiple fisheries is a strategy that can help. When fishery participants can access many fisheries, they can then support themselves and the local fishery in difficult years, tapping in to multiple resources. This in turn also helps the environment, as shifting fishing effort from one species that isn’t doing so well relieves pressure when fishing then targets another species that may be doing much better at that time.

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Fish at Night: Announcing a symposium focused on nocturnal fish

Posted on April 3, 2015 By Guest Writer
Blogging, Science

AGeoffrey Shideler is the Assistant Editor at Bulletin of Marine Science, an independent peer-reviewed journal at the Rosenstiel School of Marine & Atmospheric Science at the University of Miami.

AStudying the ocean at night can be difficult. Yet this is precisely the time when many fish are most active. Scientists have found that many important processes occur at night, such as spawning, larval settlement, migrations, feeding, and more. Many organisms rise toward the surface, creating massive pulses of biodiversity and biomass. In nearly every aquatic environment, from open waters to coral reefs, what one observes by day can be quite different from what is happening after the sun sets. At the same time, in polar seas and at great depths, “night” can span, months, years, and beyond. Fish and fishers in these dark systems have adopted tactics and strategies that take advantage of low-light conditions and their study may offer solutions to problems in warmer, shallower habitats.

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What Conservationists Need to Know About Surveys

Posted on April 2, 2015April 2, 2015 By Bluegrass Blue Crab 1 Comment on What Conservationists Need to Know About Surveys
Science

This post in the first of a new series entitled “The Basics of the Human Dimensions”, which gives the most basic tips for how to work with social scientists and social questions in marine conservation efforts. Whether you are the stakeholder, the collaborating natural scientist, or both, this series will hopefully make the journey into the human dimensions easier. 

Whether someone has emailed you a survey asking for your expert opinion on something or you would generally like to poll the audience of your research about their thoughts, the basic survey is often the first experience with social science one encounters. And yes, these surveys come in a wide variety of forms and quality, and you are right to judge and raise an eyebrow at them to a certain degree, whether that is out of sheer curiosity or justified skepticism. If you are on the side of wanting to deploy a survey, my best piece of advice would be to hire or consult with a survey writer, particularly if you’re not crystal clear on how the questions and the later statistical analysis will relate. But there’s some more subtle things you should know in dealing with surveys at all stages of the process.

When someone asks you to take a survey

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A request to environmentalists and journalists discussing shark fin ban legislation

Posted on March 23, 2015 By David Shiffman
Blogging, Science

Many of the U.S. state-level shark fin bans which make it illegal to buy, sell, or possess shark fins include exemptions for smooth and spiny dogfish, i.e. by far the most common species of sharks caught by U.S. fishermen. Some of these fisheries have significant conservation concerns associated with them. Much of this fishing is not currently subject to catch limits or other basic management

You would never know that most locally caught sharks are not affected at all by fin bans by reading most of the action alerts that some conservation organizations send out to encourage ocean lovers to support these laws, by following most of the media coverage of these laws, or by reading most people’s excited posts after these laws pass. Many of these inaccurately say that shark fin bans “protect all sharks.”

I have a request to make to the conservation organizations supporting these laws, journalists covering them, and the shark and ocean lovers celebrating when they pass. If you want to support laws with an exemption for dogfish sharks, that’s fine, but let’s have an open and honest discussion about why you are doing this instead of just acting like it isn’t happening.

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How to write and publish a scientific paper in the field of marine ecology and conservation

Posted on March 6, 2015 By David Shiffman
Blogging, Science

Author’s note: The following blog post is an adaptation of a professional development training workshop that I gave to our lab’s interns. It is intended to serve as an introductory guide for advanced undergraduate and beginning graduate students who have never published a scientific paper before. It’s a combination of advice I’ve received from teachers, colleagues, and training workshops. This advice has worked well for me personally in the fields of marine ecology and conservation; as of this writing I have 14 published papers and have served as a peer reviewer for 26 different journals. However, there are lots of other strategies out there, and you should seek them out and figure out what works best for you, particularly if you’re in a radically different academic discipline. 

Part 1: What is a scientific paper?

The process of writing and publishing peer-reviewed scientific papers can be confusing and intimidating to beginning students, who may know that these papers are professionally important but not how to create their own. Different in scope, style, and significance from a class term paper or thesis, these papers are formal, technical writeups of a scientific research project or idea. They are written by scientists or technical experts, and peer-reviewed by other scientists or technical experts who (ideally) provide constructive criticism.

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Set research free with IGoR!

Posted on February 26, 2015February 26, 2015 By Guest Writer
Science

Dr. Mickey von Dassow is a biologist who studies how biomechanics affects development-environment interactions. He received his PhD in Integrative Biology at UC Berkeley, studying how fluid flow affects colonial marine animals. As a postdoc (U. of Pittsburgh), he studied the mechanics of tissue movements that shape amphibian embryos. Currently he is a guest research scientist at the Duke Marine Lab, and works primarily on sea urchin embryos.


"IGoR! Fetch me a protocol!" Provided by Michelangelo Von Dassow.
“IGoR! Fetch me a protocol!” Provided by Michelangelo von Dassow.

Can everyone do scientific research? I hope to convince you the answer is “yes.” I’m trying to develop an online platform (http://IGoR.wikidot.com) to help amateur scientists and other science enthusiasts do their own scientific research, while at the same time helping experienced scientists tap into the skills and creativity of a broader community. I hope you’ll love the idea and want to help me spark IGoR to life*.

Currently, the vast majority of scientific research is done by professionals supported by big institutions, such as universities, government labs, or corporations. It’s difficult for even a trained and experienced scientist to find the resources and time to do research without this backing. There are pockets of science where amateurs frequently make substantial contributions (e.g. amateur astronomy and taxonomy). However, it wasn’t that long ago that the majority of science was done by people – such as Darwin and Wallace – who were outside academia. In fact, the great intellectual revolutions that created modern science were not started by trained scientists: there were no trained scientists at the time!

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Fun Science FRIEDay – Evolution, what’s it good for?

Posted on February 20, 2015February 19, 2015 By Kersey Sturdivant
Science, Uncategorized

It is widely accepted that the world around us is changing, and as a result the organisms that exist adapt with that change or are resigned to the fossil record. Evolution, it’s a fact of life… or is it? UCLA paleobiologist J. William Schopf, and colleagues,  have discovered an organism that has remained relatively unchanged over a 2.3 billion year period. Meh, who needs evolution? These bacteria were discovered in the muddy sediments of the deep sea and represent the greatest lack of evolution ever seen!

1871 editorial cartoon depicting Charles Darwin as an ape. (Photo credit: Unknown artist in 1871 from The Hornet newspaper - no longer in publication)
1871 editorial cartoon depicting Charles Darwin as an ape. (Photo credit: Unknown artist in 1871 from The Hornet newspaper – no longer in publication)

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Bioshock Oceanographic: How deep is Rapture?

Posted on February 11, 2015February 17, 2015 By Andrew Thaler 5 Comments on Bioshock Oceanographic: How deep is Rapture?
Popular Culture, Science

“To build a city at the bottom of the sea! Insanity. But where else could we be free from the clutching hand of the Parasites? Where else could we build an economy that they would not try to control, a society that they would not try to destroy? It was not impossible to build Rapture at the bottom of the sea. It was impossible to build it anywhere else.”

Andrew Ryan, Bioshock

Rapture, a city beneath the sea, the crowning achievement of Randian industrialist Andrew Ryan. This atmospheric world of technological wonder and urban decay serves as the setting for one of the greatest video games of all time, Bioshock. The player, finding themselves stranded at sea in a fiery plane crash, makes their way towards a lonely lighthouse, descends into the sunken, desolate city, and unlocks the mysteries surrounding the creation and destruction of a most unusual city.

Rapture. From Bioshock.
Rapture. From Bioshock.

Though many questions are answered as the player journeys into the heart of Rapture, collecting audio diaries of its residents along the way, one question still eludes: How deep is Rapture and where, exactly, is it?

Read More “Bioshock Oceanographic: How deep is Rapture?” »

Happy Fun Science FRIEDay – Change you DNA… One Step at a Time!

Posted on January 31, 2015 By Kersey Sturdivant
Science

It’s around about this time of year when people begin to question their New Year’s resolutions to commit to better health. You know what I am talking about. Right after NYE the number of people at the gym swells to an unholy number of hopeful fitness do-gooders. Yet without fail, by the end of the month the gym population begins to stabilize back to its pre New Year’s resolution numbers. But maybe, just maybe, this article will convince you to stick with your commitment to better health, change your DNA regarding your approach to fitness, and keep on exercising! Because exercise, as a new study has found, does just that. Exercise changes the shape and functioning of our genes, an important step on the way to improved health and fitness!

Photo credit: precisionnutrition.com
Photo credit: precisionnutrition.com

Read More “Happy Fun Science FRIEDay – Change you DNA… One Step at a Time!” »

Fun Science FRIEDay – Darwin Says Survival of the… empathetic?!

Posted on January 23, 2015 By Kersey Sturdivant
Blogging, Science

Dacher Keltner, professor of psychology and founding faculty director of the Greater Good Science Center at UC Berkeley has been pushing an idea – Humans are built to be good, because it aids in human survival.

Photo credit:  ThinkGeek @ shirtoid.com
Photo credit: Berkeley Social Interaction Lab, UC Berkley

Read More “Fun Science FRIEDay – Darwin Says Survival of the… empathetic?!” »

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