Southern Fried Science

Ocean things we’re thankful for, West Coast Edition

November 26, 2014 Andrew Thaler

Blogging

As some of you know (especially if you follow us on OpenExplorer), Amy and I have once again made the vast, continent-spanning migration from the Pacific to Atlantic coast, this time settling down in rural Virginia. While we enjoyed our time out in the weirdly foggy, impossibly dry San Francisco Bay Area, we also learn that the southeast US is our ecological niche. Even so, we met hundreds of new and interesting people, got to play with some tremendous tech, and had a great time. So here are the top five San Francisco Bay Area ocean things we are thankful for.

1. Vallejo

Of all the cities that comprise the “Bay Area”, Vallejo, the smallest and furthest from the heart of San Francisco, feels the most maritime, by far. With a downtown only blocks from the waterfront, an expansive city park right at the edge, and an active ferry terminal for commuters, people with a nautical cut to their jib will feel right at home. Though smaller and more suburban than most Bay Area cities, it’s also a whole lot cheaper, with 2 bedroom houses renting for the cost of hot swapping* a futon in San Francisco.

Fun Science FRIEDay – Death Star

November 21, 2014November 21, 2014 Kersey Sturdivant

Blogging

Happy Fun Science FRIEDay!

While Ebola wreaks havoc on Homo sapiens in the terrestrial world, there has been an even more virulent disease causing the destruction of a marine animal, the sea star. Today we talk about this deadly condition impacting sea star populations and the recent discovery of just what is causing this affliction.

Royal starfish (Astropecten articulatus) on the beach. (Photo credit: TheMargue - http://www.fotopedia.com/items/flickr-2884079538) — Royal starfish (Astropecten articulatus) on the beach.
(Photo credit: TheMargue – http://www.fotopedia.com/items/flickr-2884079538)

Agents of seal: stealthy seals use subsurface structures to sneak by sharks

November 18, 2014December 8, 2014 Michelle Jewell 1 Comment

Blogging, Science

Michelle Jewell is a Zoologist specialized in predator/prey behaivour and the Scientific Communicator for EDNA Interactive. She has spent the past 4 years studying the behaviour of white sharks and Cape fur seals at Geyser Rock, ‘Shark Alley’, South Africa.

Predators are highly influential in ecosystems because of the many top-down effects they can have. The most obvious and direct way predators influence an ecosystem is by eating and reducing the number of prey animals in the system, but another equally important way is the indirect influence they have on the behaviour of prey animals.

If you have avoided parking on a risky-looking street, taken a different route between classes to avoid a bully, or abandoned a forest hike because of snapping twigs in the distance, you have been indirectly affected by perceived ‘predators’. In the wild, prey animals will also change their behaviour when they perceive that predators are around, and these altered behaviours often influence other species, ultimately shaping the ecosystem.

Fun Science FRIEDay – The Origin of HIV

November 14, 2014November 25, 2014 Kersey Sturdivant

Blogging, Science

Happy Fun Science FRIEDay

After a hiatus, I hope to get back to regularly writing these pieces. This week I was particular inspired to focus on an article I read about the discovery of the origins of the human immunodeficiency virus (HIV) and subsequently the origins of AIDS.

Scanning electron micrograph of HIV-1 (in green) budding from cultured lymphocyte. Multiple round bumps on cell surface represent sites of assembly and budding of virions. Photo Credit: Centers for Disease Control (CDC) — Scanning electron micrograph of HIV-1 (in green) budding from cultured lymphocyte. Multiple round bumps on cell surface represent sites of assembly and budding of virions.
Photo Credit: Centers for Disease Control (CDC)

AIDS burst onto the scene like a bat out of hell, wreaking havoc on an unsuspecting human population. First recognized in the early 1980s by the Centers for Disease Control and Prevention, better known as the CDC), AIDS went on to cause approximate 36 million deaths globally becoming one of the most devastating diseases in human history. But where did this affliction come from and what were the chain of events that led to the pandemic?

Marine Ecology via Remote Observation: an update from #ROV2PNG

November 12, 2014November 12, 2014 Andrew Thaler

Science

Note: we’re home after an exceptional 3 weeks of work in Papua New Guinea. Sadly, the course was so intense that we weren’t able to produce updates during the program. Instead, please accept these time-shifted updates from #ROV2PNG. After more than a week of building robots, developing research proposals, presenting and defending their proposals to … Read More “Marine Ecology via Remote Observation: an update from #ROV2PNG” »

Newly-build robots face many sea trials: an update from #ROV2PNG

November 10, 2014 Andrew Thaler

Science

With a week of robot building behind us, it’s time to put our robots, and our newly minted robot pilots to the test. Monday began with a day of tether management and pilot training. The OpenROV does not come with its own, pre-built tether management system; operators must design their own and adapt it to the unique challenges of their field environment. So we set the team off to develop their own tether management systems and the results were astounding, artistic, and clever.

One of several innovative tether management systems.

With tethers securely managed, it was time for Erika’s Pilot Academy. As some teams continued to perform maintenance and troubleshooting, and some worked on their ecology projects, others were led, group by group, to the test tank, where Erika and Dominik had built a challenge course for them to fly. Without looking at the tank or robot, each student had to pilot an ROV around the tank, collect a weighted target, and bring it to the surface. Even for veteran OpenROV pilots, this exercise can be challenging. We closed out the first day of pilot training with 23 skilled pilots.

Watch Outbreak Wednesday at 8 and tweet along with public health experts!

November 10, 2014 David Shiffman

Popular Culture, Science

Much of the public panic about the current ebola situation can be contact traced to the 1995 movie “Outbreak.” This fictional movie is based on the supposedly true story “the Hot Zone” by Richard Preston , though an important new analysis by infectious disease researcher Dr. Tara Smith shows that the Hot Zone has some major factual … Read More “Watch Outbreak Wednesday at 8 and tweet along with public health experts!” »

Six new robots join Papua New Guinea’s marine science assets: an update from #ROV2PNG

November 7, 2014November 6, 2014 Andrew Thaler 1 Comment

Science

Students prepare to soak test their ROV.

After a long week of intensive robot building, six brand new OpenROVs went into the water on Friday. Our student’s hard work paid off as their robots dove into the freshwater test tank. There are few things more rewarding than watching students, who’ve sweated over a difficult build while learning challenging new skills for 12 hours or more every day, launch their completed robots drive them around the test tank for the first time.

Of course, failure is part of our pedagogy, and two robots will require another day of troubleshooting before they can be released into the sea.

Dominik sets up the Chromebooks for their first flight.

Media coverage of the Yates Supreme Court case isn’t treating illegal fishing seriously

November 6, 2014 David Shiffman 1 Comment

Conservation, Science

This week, the Supreme Court heard oral arguments for Yates vs. the United States. Commercial fishermen John Yates was caught with dozens of illegally caught grouper, he destroyed much of the evidence of this crime, and he was charged under a law designed to prosecute people for destruction of evidence. He is now suing the government for overreach.

The question of whether a law most commonly known for being used to deal with destruction of financial records can also be used to deal with destruction of evidence of illegal fishing is an interesting one. The Obama administration claims that the law was designed to be a generic Federal destruction of evidence ban, and it has also been used, according to a USA Today article, to “go after the destruction of cars, cash, cocaine, child pornography- even murder weapons and bodies.” It seems to me that it is an appropriate role of government to write regulations to ensure that our shared natural resources are sustainably exploited, it is an appropriate role of government to enforce violations of those laws, and it is an appropriate role of government to punish people for destroying evidence of those violations. A much bigger problem, however, is with much of the media coverage of this case.

Why #DoctorWho needs a science advisor!

November 5, 2014November 5, 2014 Chris Parsons 2 Comments

Uncategorized

There is probably no one in the science geek/nerd community who has not heard of Doctor Who, even if they can’t recite the names of all 13 actors who have played a regenerating incarnation of the Doctor (I’m including the awesome John Hurt in this list), or don’t own an exceedingly long, multi-colored scarf. Doctor Who is the longest running science fiction TV show in the world (first airing in 1963) and consistently gains peak viewing figures in the UK, and has a substantial number of viewers around the world. It’s the British equivalent of Star Trek, although instead of phasers the Doctor has a sonic screwdriver – which is basically the science/engineering equivalent of a magic wand. Also there is distinctly less snogging of aliens and gratuitous bare-chested scenes in Doctor Who compared to Star Trek.

I’ve watched Doctor Who almost religiously since 1974, and as a youngster owned a complete set of Doctor Who novelizations, decades of annuals and a subscription to the magazine. I’m a dyed in the multi-colored wool Whovian (as fans are called).